Specimen Images

Object ID:caos-cloud.linode-us-east.16_188.111f4f84-92ca-4cf8-a2a4-04e994409a50.jpg

Image Metadata
Batch:648
File Name:MKPCH/image_5595+1263483030.JPG
Sample ID:09PROBE-05595
Orientation:Herbarium Specimen
License Holder:
License Year:2010
License:Copyright
Institution:
Photographer:Information Pending

Collection Site(s)

Sequence: ITS2

Sequence ID: MKPCH570-09.ITS2 GenBank Accession: JN999672
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) MatK-1RKIM-f (ACCCAGTCCATCTGGAAATCTTGGTTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) MatK-3FKIM-r (CGTACAGTACTTTTGTGTTTACGAG) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
TGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCC-----ATCCTCTTAAGGATACGGGACGGAAGCTGGTCTCCCGTGTTTTACCGAATGCGGTTGGCCAAAATCTGAGCTAAGGACGCCA-GGAGTGTCTCGACATGCGGTGGTGAATTCAAGC---CTCTTTAGTTTGTCGGCCGCTCTTGTCTGGAAGCTCTT--GATGACCCAAAGTCCTCAACGCGACCCCAGGTCAGGCGAGATCACCCGCTGAGTTTAA
Locus: ITS2
Nucleotides: 322 bp
Sequence Upload Date: 2011-11-09

Sequence: matK

Sequence ID: MKPCH570-09.matK GenBank Accession: JN966711
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) MatK-1RKIM-f (ACCCAGTCCATCTGGAAATCTTGGTTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) MatK-3FKIM-r (CGTACAGTACTTTTGTGTTTACGAG) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
TCTTCTTTGCATTTTTTTCGGTTCTGTCTATAC------------GAGTCTTGTAATTGGAAGAATTTTGATATTAAAAAAACA------------------------------------------------TCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATACGAATCCATCTTTTTTTTTCTACGCAAGCGGTCTTCTCATTTACGATCGACATCTTATAAAGTCCTTTTTGAGCGAATTTTATTCTATGTAAAAATACAACAT---------------TTTTTTAAAGTCTTTGTTAAT---AATTTTCCGGCGATCCTAGGGCTGCTCAAGGATCCTTTCCTACATTATGTTCGATATCACGGAAAATGCATTCTGGCAACAAAAGAT------ACGCCGCTTCTGATGAATAAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCAGTATGGTTTCAACCGCAAAAGGTCAATATAAAT------CAATTATCTAAAGATAATTTTGAGTTTATGGGTTATCTGTCAAGT------TTGCGATTAAATCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCCTTTTTAATAGATAATGTTAGAATA------AAATTGTATAGCAAAATTCCAATTTCTTCTATTATTGGATCGTTGGCTAAAGATAAATTTTGTAATGTATTAGGGCATCCCATTAGCAAAGCGACCTGGGCGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGCGTATATGCAGAAATATTTCTCATTATTACAGCGGATCCTCAAAAAAAAAGAATTTGTATCGAATAAAATATAT
Locus: matK
Nucleotides: 866 bp
Sequence Upload Date: 2012-01-05

Sequence: rbcLa

Sequence ID: MKPCH570-09.rbcLa GenBank Accession: JN966038
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) MatK-1RKIM-f (ACCCAGTCCATCTGGAAATCTTGGTTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) MatK-3FKIM-r (CGTACAGTACTTTTGTGTTTACGAG) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
agtgttggattcaaagctggtgttaaagagtataaattgacttattatactcctgaatatgaaaccaaggatactgatatcttggcagcattccgagtaactcctcaacccggagttccacctgaagaagcaggggctgcggtagctgctgaatcttctactggtacatggacaactgtgtggaccgacgggcttaccagccttgatcgttacaaaggacgatgctaccacatcgagcccgttccaggagaagaaactcaatttattgcgtatgtagcttaccccttagacctttttgaagaaggttcggttactaacatgtttacctcgattgtgggtaatgtatttgggttcaaagccctggctgctctacgtctagaggatctgcgaatccctcctgcttatactaaaactttccagggaccacctcatggtatccaagttgaaagagataagttgaacaagtatggacgtcccctattaggatgtactattaaacctaaattggggttatccgcgaag
Locus: rbcLa
Nucleotides: 522 bp
Sequence Upload Date: 2015-09-21

Attribution

Specimen Depository: Churchill Northern Studies Centre
Sequencing Center: Centre for Biodiversity Genomics
Photography: Information Pending
Collectors: M.Kuzmina
Specimen Identification: Masha L. Kuzmina

Identifiers

Process ID: MKPCH570-09 Sample ID: 09PROBE-05595
Record Created: 2009-10-06 Museum ID: BIO 09PROBE-05595
Collection Code: Field ID: MK-0907-33
Deposited In: Churchill Northern Studies Centre
Associated Datasets: DATASET-MKPCHP1 | The species resolution with the DNA barcode reference library for the vascular plants of the Churchill, Manitoba
DS-VASCAN | A DNA barcode library for the vascular plants of Canada
Specimen Linkout:
Checksum: f85837433da97e7b72c719f967908951

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Thlaspi
Order: Brassicales Species: Thlaspi arvense
Family: Brassicaceae Scientific Name Authorship: L.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes: <VERBATIM LOCALITY>Pipe line near Churchill|Forest along the pipe|58.7469|-94.1151|</VERBATIM LOCALITY>

Collection

Country/Ocean: Canada (CA) Collection Date Start: 2009-07-29
Province/State: Manitoba Collection Date End:
Region/County: Churchill Coord. Source:
Sector: 3 km SE Churchill, pipeline Coord. Accuracy:
Exact Site: Forest along the pipe Elevation:
Habitat: Elevation Accuracy:
Latitude: 58.747 Depth:
Longitude: -94.115 Depth Accuracy:
Sampling Protocol:
Collectors: M.Kuzmina
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: Southern_Hudson_Bay_taiga

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/MKPCH570-09
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMKPCH570-09&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMKPCH570-09&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfL1DnD2MDU30DWwtM7JzM0sSU0BAMaRC0k=?length=3

AJAX URLs

https://caos.boldsystems.org/api/objects/caos-cloud.linode-us-east.16_188.111f4f84-92ca-4cf8-a2a4-04e994409a50.jpg?subunit=1024.jpg
https://portal.boldsystems.org/api/maps/eAHLTCm2KijKT04tLs5MsfL1DnD2MDU30DWwtM7JzM0sSU0BAMaRC0k=?offset=10

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